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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 415 | PhyloBayes | Phylogenetics | Phylogenetics | 36.34 | +8% |
| 2062 | PhyloMeasures | Other | Other | 10.5 | 0% |
Data as of: Apr 12, 2026
| 807 | phyloseq -- Microbiome Data Analysis in R | Metagenomics | Metagenomics | 29.7 | +3% |
| 396 | PhyML | Phylogenetics | Phylogenetics | 36.4 | +8% |
| 1922 | PhysiCell | Systems Biology | Systems Biology | 21.84 | +3% |
| 267 | phytools | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 1403 | Phytozome | Utilities & Infrastructure | Utilities & Infrastructure | 26.7 | +3% |
| 1404 | piano | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 1710 | picante | Other | Other | 24.3 | +3% |
| 9 | Picard | Genomics | Genomics | 65.08 | +15% |