phytools

Harvest Tools — core genome phylogenomics suite for rapid whole-genome alignment, SNP extraction, and phylogenetic tree inference from closely related microbial genomes. Parsnp performs MUMmer-based c

1 shared topic • 2 shared operations

Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.

1 shared topic • 1 shared operation

Microreact — web-based visualization platform for genomic epidemiology that combines interactive phylogenetic trees, geographic maps, and timelines with metadata tables synchronized through client-sid

1 shared topic • 1 shared operation

OrthoFinder — fast, accurate ortholog inference for comparative genomics. Identifies orthogroups, orthologs, gene trees, rooted species trees, and gene duplication events from protein or nucleotide se

1 shared topic • 1 shared operation

scipy.optimize — Unified interface for numerical optimization in Python. Provides local and global minimization (minimize, differential_evolution, dual_annealing), root finding (root, root_scalar), cu

1 shared topic • 1 shared operation