PhysiCell

Use when working with Kilosort — the GPU-accelerated spike sorting software for high-density extracellular electrophysiology recordings. Covers Kilosort4 (Python, PyTorch-based), probe/channel map con

3 shared topics • 1 shared operation

Maftools — R package for analyzing somatic mutations from cancer sequencing (MAF files). Provides oncoplots for mutation visualization, clonality analysis, tumor burden estimation, mutational signatur

3 shared topics • 1 shared operation

Use when working with SpikeInterface — the unified Python framework for extracellular electrophysiology spike sorting. Covers loading recordings from 30+ formats (NWB, OpenEphys, Maxwell, Intan, MDA,

3 shared topics • 1 shared operation

Use this skill when building, running, or validating CompuCell3D (CC3D) multicellular simulations. Covers Cellular Potts Model workflows, Python-based steppables, headless execution with `python -m cc

2 shared topics • 2 shared operations

mrgsolve — R package for simulation from ODE-based PK/PD and systems pharmacology models with C++ model code, NONMEM-style event/data inputs, and high-throughput population simulation workflows. Use w

2 shared topics • 2 shared operations