SpikeInterface

Use when working with Kilosort — the GPU-accelerated spike sorting software for high-density extracellular electrophysiology recordings. Covers Kilosort4 (Python, PyTorch-based), probe/channel map con

3 shared topics • 1 shared operation

Maftools — R package for analyzing somatic mutations from cancer sequencing (MAF files). Provides oncoplots for mutation visualization, clonality analysis, tumor burden estimation, mutational signatur

3 shared topics • 1 shared operation

Use this skill for PhysiCell multicellular simulation workflows, including project selection with Makefile targets, OpenMP-ready build checks, XML settings validation, deterministic run-command genera

3 shared topics • 1 shared operation

Monolix/NONMEM population PK/PD modeling skill for nonlinear mixed-effects workflows across GUI-first MonolixSuite and control-stream-driven NONMEM. Use when users need data formatting for ID/TIME/obs

2 shared topics • 2 shared operations

medaka -- neural network-based tool from Oxford Nanopore Technologies for creating consensus sequences and calling variants from nanopore sequencing data. Polishes draft assemblies from Flye, miniasm,

3 shared topics