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Use when working with Kilosort — the GPU-accelerated spike sorting software for high-density extracellular electrophysiology recordings. Covers Kilosort4 (Python, PyTorch-based), probe/channel map con
Use with AI
Install the MCP server or CLI to instantly fetch Kilosort documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/kilosort
Maftools — R package for analyzing somatic mutations from cancer sequencing (MAF files). Provides oncoplots for mutation visualization, clonality analysis, tumor burden estimation, mutational signatur
3 shared topics • 1 shared operation
Use this skill for PhysiCell multicellular simulation workflows, including project selection with Makefile targets, OpenMP-ready build checks, XML settings validation, deterministic run-command genera
3 shared topics • 1 shared operation
Use when working with SpikeInterface — the unified Python framework for extracellular electrophysiology spike sorting. Covers loading recordings from 30+ formats (NWB, OpenEphys, Maxwell, Intan, MDA,
3 shared topics • 1 shared operation
medaka -- neural network-based tool from Oxford Nanopore Technologies for creating consensus sequences and calling variants from nanopore sequencing data. Polishes draft assemblies from Flye, miniasm,
3 shared topics
Telomere biology toolkit for measuring telomere length from sequencing data, analyzing telomere repeat content, detecting ALT (Alternative Lengthening of Telomeres) pathways, and studying telomere str
3 shared topics