piano

Bambi (BAyesian Model-Building Interface) is a high-level Python package for fitting Bayesian generalized linear and generalized linear mixed models using a concise, R-style Wilkinson formula syntax.

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clusterProfiler — universal enrichment analysis tool for interpreting omics data using Gene Ontology, KEGG pathways, WikiPathways, Reactome, Disease Ontology, and custom gene sets. Implements over-rep

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fgsea — fast preranked gene set enrichment analysis in R using an adaptive multi-level split Monte-Carlo scheme for arbitrarily precise GSEA p-values. Provides fgsea(), fgseaMultilevel(), plotEnrichme

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MetaboAnalyst — comprehensive R package and web platform for metabolomics data analysis and interpretation. Provides statistical analysis (t-test, ANOVA, PCA, PLS-DA), pathway analysis (KEGG, SMPDB),

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rootwater is a Python toolbox for estimating root water uptake (RWU) from diurnal soil moisture dynamics in the rhizosphere, with complementary tools for converting sap velocity to sap flow in active

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