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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1186 | Pegasus (Cumulus/Pegasus) | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 1396 | PEPPER | Genomics | Genomics | 26.7 | +3% |
Data as of: Apr 12, 2026
| 1397 |
| PEPPER-Margin-DeepVariant |
| Genomics |
| Genomics |
| 26.7 |
| +3% |
| 394 | Percolator | Proteomics | Proteomics | 36.4 | +8% |
| 395 | Peregrine | Genomics | Genomics | 36.4 | +8% |
| 1398 | Perseus | Proteomics | Proteomics | 26.7 | +3% |
| 1399 | pertpy | Machine Learning | Machine Learning | 26.7 | +3% |
| 952 | Perturb-seq Tools (MIMOSCA) | Genomics | Genomics | 29.34 | +3% |
| 334 | Pfam | Utilities & Infrastructure | Utilities & Infrastructure | 38.74 | +8% |
| 266 | PGAP | Genomics | Genomics | 38.8 | +8% |