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Perturb-seq analysis tools including MIMOSCA (Multi-Input Multi-Output Single-Cell Analysis) for CRISPR perturbation screens with single-cell RNA-seq readout. Handles guide RNA assignment to cells, pe
Use with AI
Install the MCP server or CLI to instantly fetch Perturb-seq Tools (MIMOSCA) documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/perturb-seq-tools
Alleloscope — allele-specific copy number analysis and tumor clonality inference from single-cell multi-omics data (scDNA-seq and scATAC-seq). Estimates allele-specific copy number profiles using SNP
3 shared topics • 1 shared operation
Tools for manipulating next-generation sequencing data stored in SAM/BAM/CRAM format, including sorting, indexing, and format conversion.
3 shared topics • 1 shared operation
Sarek — nf-core Nextflow pipeline for germline and somatic variant calling from whole-genome sequencing (WGS), whole-exome sequencing (WES), and targeted sequencing data. Supports multiple variant cal
2 shared topics • 2 shared operations
sigmap is a C++ tool for signal-level alignment of nanopore sequencing data, mapping raw electrical signals (squiggles) directly to a reference genome without basecalling. Uses Dynamic Time Warping (D
2 shared topics • 2 shared operations
SvABA -- structural variant and indel caller using genome-wide local assembly. Detects deletions, insertions, duplications, inversions, and complex rearrangements from short-read (Illumina) whole-geno
2 shared topics • 2 shared operations