Perseus

Use when working with nf-core/differentialabundance — a reproducible Nextflow pipeline for differential abundance analysis of count data from RNA-seq, ATAC- seq, proteomics, or any feature-by-sample c

2 shared topics • 2 shared operations

Bambi (BAyesian Model-Building Interface) is a high-level Python package for fitting Bayesian generalized linear and generalized linear mixed models using a concise, R-style Wilkinson formula syntax.

2 shared topics • 1 shared operation

Boltz-1 — open-source deep learning model for predicting biomolecular 3D structures and interactions, approaching AlphaFold3-level accuracy. Supports protein, DNA, RNA, and small-molecule ligand struc

2 shared topics • 1 shared operation

Gnina — deep learning molecular docking program built on AutoDock Vina. Uses convolutional neural networks (CNNs) to rescore protein-ligand poses for improved binding pose prediction and virtual scree

2 shared topics • 1 shared operation

MaxQuant — quantitative proteomics platform for analyzing large-scale mass spectrometry data. Integrates the Andromeda search engine for peptide identification, supports label-free quantification (LFQ

2 shared topics • 1 shared operation