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Use when working with xTrimoGene or scFoundation-style single-cell foundation model inference for cell embeddings, gene embeddings, gene-batch embeddings, or xTrimoGene-based fine-tuning. Trigger this
Use with AI
Install the MCP server or CLI to instantly fetch xTrimoGene documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/xtrimogene
Expression Atlas is the EMBL-EBI database and programmatic toolkit for querying baseline and differential gene expression across thousands of experiments in 50+ species. Use this skill to search exper
2 shared topics • 2 shared operations
WARP (WDL Analysis Research Pipelines) — Broad Institute's cloud-optimized collection of genomics pipelines written in WDL (Workflow Description Language). Covers whole-genome sequencing (WGS), whole-
2 shared topics • 2 shared operations
Use when working with GEARS, the SNAP Stanford method for predicting transcriptional outcomes of single-gene and multi-gene perturbations from single-cell RNA-seq perturbation screens. GEARS exposes t
2 shared topics • 2 shared operations
Benchmark and compare bioinformatics tools for a given analysis task using published benchmark data (accuracy, runtime, memory), PrecisionFDA and CAMI challenge results, bc7score community metrics, an
2 shared topics • 1 shared operation
DRAGEN (Dynamic Read Analysis for GENomics) — Illumina's FPGA-accelerated bioinformatics platform for secondary analysis of next-generation sequencing data. Performs hardware-accelerated mapping, alig
2 shared topics • 1 shared operation