ViennaRNA

DRIMSeq is a Bioconductor R package for Differential Transcript Usage (DTU) analysis using a Dirichlet-multinomial distribution to model transcript-level count proportions. Tests whether relative tran

2 shared topics • 2 shared operations

RNAcentral is the comprehensive non-coding RNA sequence database aggregating sequences from 40+ expert databases (miRBase, Rfam, lncRNAdb, Ensembl, HGNC, GENCODE, and more) under unified URS identifie

2 shared topics • 2 shared operations

salmon — Fast, bias-aware transcript quantification from RNA-seq data using selective alignment to the transcriptome. Supports bulk RNA-seq (mapping-based and alignment-based modes), single-cell RNA-s

2 shared topics • 2 shared operations

tximeta — R/Bioconductor package for importing transcript-level quantification data from Salmon, alevin, piscem, and other quantifiers with automatic metadata attachment. Automatically identifies the

2 shared topics • 2 shared operations

TCGAbiolinks for searching, downloading, and analyzing cancer genomics data from the NCI Genomic Data Commons (GDC). Routes tasks for GDCquery/GDCdownload, data preparation with GDCprepare, differenti

2 shared topics • 1 shared operation