VectorBase

Apache Arrow — cross-language columnar in-memory analytics format and ecosystem. Provides zero-copy IPC between Python, R, C++, Java, Go, and Rust via shared memory and the C Data Interface. Use for:

2 shared topics • 3 shared operations

niffler — transparent compressed file I/O for Rust bioinformatics pipelines. Sniffs compression format from magic bytes using get_reader and from_path. Supports gzip, bzip2, xz/lzma, zstd, and BGZF (b

2 shared topics • 3 shared operations

snapgene-reader — Python library for parsing SnapGene *.dna binary files into Python dicts or Biopython SeqRecord objects. Converts proprietary SnapGene format to GenBank (.gbk), extracts annotated se

2 shared topics • 3 shared operations

Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv

2 shared topics • 2 shared operations

Dockstore — open platform for sharing Docker-based bioinformatics tools and workflows written in CWL, WDL, Nextflow, and Galaxy. Provides workflow discovery, versioned registrations, TRS API for progr

2 shared topics • 2 shared operations