niffler — transparent compressed file I/O for Rust bioinformatics pipelines. Sniffs compression format from magic bytes using get_reader and from_path. Supports gzip, bzip2, xz/lzma, zstd, and BGZF (b
Use with AI
Install the MCP server or CLI to instantly fetch niffler documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/niffler
Apache Arrow — cross-language columnar in-memory analytics format and ecosystem. Provides zero-copy IPC between Python, R, C++, Java, Go, and Rust via shared memory and the C Data Interface. Use for:
2 shared topics • 3 shared operations
snapgene-reader — Python library for parsing SnapGene *.dna binary files into Python dicts or Biopython SeqRecord objects. Converts proprietary SnapGene format to GenBank (.gbk), extracts annotated se
2 shared topics • 3 shared operations
VectorBase — NIAID Bioinformatics Resource Center for invertebrate vectors of human pathogens (mosquitoes, ticks, sandflies, tsetse flies, kissing bugs, and related arthropods). Provides genome assemb
2 shared topics • 3 shared operations
Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv
2 shared topics • 2 shared operations
Dockstore — open platform for sharing Docker-based bioinformatics tools and workflows written in CWL, WDL, Nextflow, and Galaxy. Provides workflow discovery, versioned registrations, TRS API for progr
2 shared topics • 2 shared operations