Loading homepage
Use when working with VAMB — Variational Autoencoders for Metagenomic Binning — a deep learning tool that groups assembled metagenomic contigs into metagenome-assembled genomes (MAGs). Takes concatena
Use with AI
Install the MCP server or CLI to instantly fetch VAMB documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/vamb
DeepConsensus — Google's gap-aware sequence transformer for improving PacBio CCS (HiFi) read accuracy post-basecalling. Use for: polishing PacBio long reads, reducing insertion/deletion errors in CCS
1 shared topic • 1 shared operation
Herro — haplotype-aware error correction for Oxford Nanopore long reads using deep learning. Corrects ONT simplex reads to Q30+ accuracy while preserving haplotype information for diploid assembly. Us
1 shared topic • 1 shared operation
RFdiffusion -- deep learning framework for protein structure generation via denoising diffusion on SE(3) protein backbone frames. Designs novel protein backbones including unconditional monomer genera
1 shared topic • 1 shared operation
TeselaGen — integrated synthetic biology platform for DNA sequence design, combinatorial library construction, lab automation, NGS analysis, and ML-guided protein engineering. Modules: DESIGN (sequenc
1 shared topic • 1 shared operation
DBSCAN (Density-Based Spatial Clustering of Applications with Noise) — fast C++ implementation of density-based clustering algorithms in R. Includes DBSCAN, HDBSCAN, OPTICS/OPTICSXi, LOF outlier detec
1 shared topic