Herro

DeepConsensus — Google's gap-aware sequence transformer for improving PacBio CCS (HiFi) read accuracy post-basecalling. Use for: polishing PacBio long reads, reducing insertion/deletion errors in CCS

2 shared topics • 2 shared operations

BPNet — deep learning framework for learning base-resolution regulatory sequence features from genomics assays (ChIP-seq, ATAC-seq, CUT&RUN). Uses dilated convolutional neural networks to predict TF b

2 shared topics • 1 shared operation

Use when working with Sei — the FunctionLab sequence-to-activity deep learning framework for predicting chromatin profiles and regulatory activity from DNA sequences. Sei takes 4096 bp DNA windows and

2 shared topics • 1 shared operation

Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem

1 shared topic • 2 shared operations

GATK HaplotypeCaller — germline short variant caller using localized de novo assembly of haplotypes. Calls SNPs and indels from BAM/CRAM alignment files, producing VCF or gVCF output. Supports single-

1 shared topic • 2 shared operations