UK Biobank Tools

formulaic — high-performance Python library for parsing Wilkinson-notation formulas and materialising model matrices from pandas DataFrames. Converts R-style formula strings (e.g. "y ~ x1 + x2 * x3")

2 shared topics • 3 shared operations

rgdal (R) bindings for GDAL and PROJ for legacy sp-class vector/raster IO, layer discovery, and CRS transformation workflows. Trigger this skill for readOGR/writeOGR, ogrListLayers, GDALinfo, and spTr

2 shared topics • 3 shared operations

Tools and workflows for accessing, querying, and analyzing data from the 1000 Genomes Project (1KGP) — the largest public catalog of human genetic variation with whole-genome sequences from 3,202 indi

2 shared topics • 2 shared operations

GATK (Genome Analysis Toolkit) — the industry-standard framework for variant discovery in high-throughput sequencing data. Covers the gatk command-line wrapper, Java/JVM tuning, resource bundle manage

2 shared topics • 2 shared operations

Nirvana — Clinical-grade genomic variant annotation tool by Illumina that processes VCF files and outputs structured JSON with transcript consequences, population frequencies, pathogenicity scores, an

2 shared topics • 2 shared operations