GATK

biotoolsVerified

v4.6.0…Docs available

Genome Analysis Toolkit. A collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery and genotyping.

nf-core OfficialBioContainersPublishedAdmin Reviewed

93trust score

FAIR

Homepage →View on bio.tools →License: BSD-3-Clause

GenomicsGenetic variationVariant callingGenotyping

Use with AI

Install the MCP server or CLI to instantly fetch GATK documentation:

Install command

claude mcp add biocontext7 -- npx @biocontext7/mcp

Or share this page: biocontext7.com/tools/gatk

EDAM Annotations

Installation

conda

conda install -c bioconda gatk4

Container Images

docker.io

docker pull docker.io/broadinstitute/gatk:4.6.0.0

quay.io

docker pull quay.io/biocontainers/gatk4:4.6.0.0--py310hdfd78af_0

Pipeline Integrations

nf-core/sareknf-core

gatk/haplotypecallersnakemake-wrapper

Version History

v4.6.02024-08-20
New Dragen-GATK joint calling mode
v4.5.02024-03-10
v4.4.02023-09-01