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Use when working with TreeMix for population genetics admixture graph inference, including input preparation from PLINK or VCF files, running maximum-likelihood tree fitting with migration events, and
Use with AI
Install the MCP server or CLI to instantly fetch TreeMix documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/treemix
TODO: Add a comprehensive description for betapart. Explain its purpose, what it does, and its primary functionalities related to beta diversity.
1 shared topic • 1 shared operation
dmrseq is an R/Bioconductor package for detecting differentially methylated regions (DMRs) from whole-genome bisulfite sequencing (WGBS) data. It fits a generalized least squares model with a smooth c
1 shared topic • 1 shared operation
scikit-allel — Python package for exploratory analysis of large-scale genetic variation data. Provides data structures for genotypes, haplotypes, and allele counts (GenotypeArray, HaplotypeArray, Alle
1 shared topic • 1 shared operation
TCGAbiolinks for searching, downloading, and analyzing cancer genomics data from the NCI Genomic Data Commons (GDC). Routes tasks for GDCquery/GDCdownload, data preparation with GDCprepare, differenti
1 shared topic • 1 shared operation
Use when working with xMIP (formerly cmip6_preprocessing) — a Python package designed to make CMIP6 (Climate Model Intercomparison Project Phase 6) data "analysis-ready" by homogenizing inconsistent n
1 shared topic • 1 shared operation