treeio

Anvi'o — integrated analysis and visualization platform for 'omics data. Supports metagenomics (MAG binning, refinement, read recruitment), pangenomics (gene cluster analysis, ANI computation), phylog

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Use when working with ggforce, the R package that extends ggplot2 with advanced geoms and statistical transformations for scientific visualization. Covers geom_mark_ellipse, geom_mark_hull, geom_mark_

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ggtree — R/Bioconductor package for phylogenetic tree visualization and annotation using ggplot2 grammar. Supports Newick, Nexus, NHX, Jplace, and BEAST tree formats. Enables layer-based annotation wi

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Use when working with GuacaMol — the benchmarking suite for de novo molecular generation — to evaluate generative models for drug-like molecules. Assesses distribution-learning (17 benchmarks: validit

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scikit-allel — Python package for exploratory analysis of large-scale genetic variation data. Provides data structures for genotypes, haplotypes, and allele counts (GenotypeArray, HaplotypeArray, Alle

1 shared topic • 2 shared operations