Anvi'o

ggtree — R/Bioconductor package for phylogenetic tree visualization and annotation using ggplot2 grammar. Supports Newick, Nexus, NHX, Jplace, and BEAST tree formats. Enables layer-based annotation wi

3 shared topics • 2 shared operations

antiSMASH (antibiotic & Secondary Metabolite Analysis SHell) — genome mining tool for identifying and annotating biosynthetic gene clusters (BGCs) in bacterial and fungal genomes. Detects NRPS, PKS, t

2 shared topics • 2 shared operations

Import, plot, and analyze bathymetric and topographic data in R. The `marmap` package provides helpers to query ETOPO bathymetry from NOAA, manipulate `bathy` grid objects, draw 2D and 3D seafloor map

2 shared topics • 2 shared operations

Use when working with abricate — ABRicate — mass screening of contigs

2 shared topics • 1 shared operation

VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out

2 shared topics • 1 shared operation