totalVI

CD-HIT — fast sequence clustering and redundancy reduction for protein and nucleotide sequences. Clusters FASTA sequences at a user-defined identity threshold to remove redundancy from databases. Prov

1 shared topic • 1 shared operation

Foldseek — fast protein structure search and clustering using the 3Di structural alphabet. Compares protein structures at sequence-search speed, supporting monomer and multimer searches, structural cl

1 shared topic • 1 shared operation

Giotto Suite — comprehensive R framework for spatial multi-omics analysis supporting 20+ spatial technologies (Visium, MERFISH, Xenium, CosMx, Slide-seq, seqFISH, CODEX, Stereo-seq). Technology-agnost

1 shared topic • 1 shared operation

Giotto Suite — R toolkit for spatial multi-omics analysis at all scales and resolutions. Processes data from Visium, MERFISH, Xenium, CosMx, Slide-seq, CODEX, Stereo-seq, and other spatial technologie

1 shared topic • 1 shared operation

totalVI and MultiVI — deep generative models from scvi-tools for multi-modal single-cell integration. totalVI jointly models scRNA-seq and protein (CITE-seq) data via a variational autoencoder for den

1 shared topic • 1 shared operation