Foldseek

CCP4 — Collaborative Computational Project Number 4 software suite for macromolecular X-ray crystallography. Provides programs for data processing (AIMLESS, POINTLESS), molecular replacement (Phaser),

2 shared topics • 1 shared operation

Chai-1 -- multi-modal foundation model for molecular structure prediction from Chai Discovery. Predicts 3D structures of proteins, nucleic acids (DNA/RNA), small molecules, glycans, ions, and their co

2 shared topics • 1 shared operation

ColabFold — fast protein structure prediction combining AlphaFold2 with MMseqs2 for rapid MSA generation. Predict monomer and multimer structures, generate multiple sequence alignments, run batch pred

2 shared topics • 1 shared operation

ESMFold — end-to-end single-sequence protein structure prediction using the ESM-2 protein language model. Predicts 3D atomic coordinates directly from amino acid sequence without multiple sequence ali

2 shared topics • 1 shared operation

Use when working with OmegaFold to predict 3D protein structures from amino acid sequences without multiple sequence alignments (MSA-free). Covers single-sequence structure prediction, batch FASTA pro

2 shared topics • 1 shared operation