Giotto Suite

BERN2 (Biomedical Entity Recognition and Normalization 2) is a biomedical NLP tool for named entity recognition and normalization in free text and PubMed abstracts. Identifies and normalizes genes, di

2 shared topics • 1 shared operation

scikit-learn — open-source Python machine learning library providing consistent estimator API for classification, regression, clustering, dimensionality reduction, model selection, and preprocessing.

2 shared topics • 1 shared operation

WNN (Weighted Nearest Neighbor) — Seurat's method for multimodal single-cell data integration that computes cell-specific modality weights and combines per-modality KNN graphs. Supports any combinatio

2 shared topics • 1 shared operation

Giotto Suite — comprehensive R framework for spatial multi-omics analysis supporting 20+ spatial technologies (Visium, MERFISH, Xenium, CosMx, Slide-seq, seqFISH, CODEX, Stereo-seq). Technology-agnost

1 shared topic • 2 shared operations

Scanpy — scalable Python toolkit for analyzing single-cell gene expression data built on AnnData. Provides preprocessing (QC, normalization, feature selection, dimensionality reduction), clustering (L

1 shared topic • 2 shared operations