Tandem-genotypes

Sarek — nf-core Nextflow pipeline for germline and somatic variant calling from whole-genome sequencing (WGS), whole-exome sequencing (WES), and targeted sequencing data. Supports multiple variant cal

1 shared topic • 3 shared operations

Tools and workflows for accessing, querying, and analyzing data from the 1000 Genomes Project (1KGP) — the largest public catalog of human genetic variation with whole-genome sequences from 3,202 indi

1 shared topic • 2 shared operations

Bracken (Bayesian Reestimation of Abundance with KrakEN) — statistical method for computing species-level abundance estimates from Kraken/Kraken2/KrakenUniq taxonomic classifications. Redistributes re

1 shared topic • 2 shared operations

featureCounts — ultrafast read counting program for assigning aligned reads (SAM/BAM) to genomic features such as genes, exons, promoters, and genomic bins. Part of the Subread package. Supports singl

1 shared topic • 2 shared operations

GATK (Genome Analysis Toolkit) — the industry-standard framework for variant discovery in high-throughput sequencing data. Covers the gatk command-line wrapper, Java/JVM tuning, resource bundle manage

1 shared topic • 2 shared operations