Sylph

IsoformSwitchAnalyzeR — R/Bioconductor package for detecting, annotating, and visualizing isoform switches with functional consequences from RNA-seq data. Integrates with Salmon, kallisto, StringTie,

2 shared topics • 1 shared operation

Use when working with kmcp — KMCP — coverage-based metagenomic sequence

2 shared topics • 1 shared operation

mapDamage2 routing skill for ancient DNA damage pattern analysis. Use this skill when users mention mapDamage2, mapDamage, ancient DNA, aDNA, DNA damage patterns, C-to-T substitutions, deamination, po

2 shared topics • 1 shared operation

Meryl — fast k-mer counting and set-operation toolkit from the Marbl group (Canu/Verkko). Counts canonical or strand-specific k-mers from FASTA/FASTQ inputs into binary meryl databases, then supports

2 shared topics • 1 shared operation

ScreenProcessing — Python pipeline for analyzing pooled genetic screens (CRISPRi/CRISPRa). Converts raw FASTQ sequencing files into library counts using fastqgz_to_counts.py, then generates sgRNA phen

2 shared topics • 1 shared operation