Meryl

TRAPD — Toolkit for Rare variant Association from Population Data. Tests gene-level rare-variant burden in case-control studies using population databases (gnomAD, TOPMed) as controls. Implements adap

2 shared topics • 2 shared operations

Use when working with gfatools — a lightweight C toolkit for GFA format manipulation — for viewing, converting, sorting, and validating Graphical Fragment Assembly (GFA) files. Provides subcommands fo

2 shared topics • 1 shared operation

IsoformSwitchAnalyzeR — R/Bioconductor package for detecting, annotating, and visualizing isoform switches with functional consequences from RNA-seq data. Integrates with Salmon, kallisto, StringTie,

2 shared topics • 1 shared operation

RTG Tools — Java-based toolkit from Real Time Genomics for haplotype-aware variant call comparison, VCF filtering, statistics, and pedigree analysis. Primary use: vcfeval for benchmarking variant call

2 shared topics • 1 shared operation

ScreenProcessing — Python pipeline for analyzing pooled genetic screens (CRISPRi/CRISPRa). Converts raw FASTQ sequencing files into library counts using fastqgz_to_counts.py, then generates sgRNA phen

2 shared topics • 1 shared operation