Space Ranger

Detects gene fusions and other structural rearrangements from RNA-Seq data.

2 shared topics • 1 shared operation

DRIMSeq is a Bioconductor R package for Differential Transcript Usage (DTU) analysis using a Dirichlet-multinomial distribution to model transcript-level count proportions. Tests whether relative tran

2 shared topics • 1 shared operation

The GTEx Pipeline is a standardized RNA-seq processing pipeline for the TOPMed project. It enables reproducible and harmonized analysis of gene expression, generating aligned reads, QC metrics, and bo

2 shared topics • 1 shared operation

ST Pipeline — automated processing pipeline for spatial transcriptomics (Spatial Transcriptomics method). Handles demultiplexing, quality trimming, contamination filtering, genome alignment, annotatio

2 shared topics • 1 shared operation

Trinity — de novo transcriptome assembler for RNA-seq data. Reconstructs full-length transcript isoforms without a reference genome using three sequential modules: Inchworm (greedy k-mer assembly), Ch

2 shared topics • 1 shared operation