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SMR/HEIDI — Summary-data-based Mendelian Randomization with HEIDI test for colocalization and causal inference between eQTL summary data and GWAS traits. Identifies genes whose expression levels are c
Use with AI
Install the MCP server or CLI to instantly fetch SMR/HEIDI documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/smrheidi
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1 shared topic • 1 shared operation
CmdStan — command-line interface to the Stan probabilistic programming language for Bayesian statistical modeling and high-performance inference. Compiles Stan programs (.stan) to C++ executables via
1 shared topic • 1 shared operation
FINEMAP — Bayesian fine-mapping tool for identifying causal variants from GWAS summary statistics and linkage disequilibrium (LD) matrices. Uses shotgun stochastic search to enumerate causal configura
1 shared topic • 1 shared operation
GWAS Catalog tools (gwas-sumstats-tools) are EMBL-EBI utilities for reading, writing, validating, and formatting genome-wide association study (GWAS) summary statistics in the GWAS-SSF standard format
1 shared topic • 1 shared operation
PyStan — Python interface to Stan for Bayesian statistical modeling and high-performance inference. Compile Stan programs (stan.build), draw posterior samples via HMC-NUTS (model.sample), extract draw
1 shared topic • 1 shared operation