SlideGraph+

scispaCy is a Python package for biomedical and scientific text processing built on spaCy. Provides pretrained NLP models for biomedical NER (disease, chemical, gene, mutation entities), entity linkin

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Use when working with Borzoi — a sequence-to-function DNA foundation model — for predicting genome-wide regulatory activity from DNA sequences. Borzoi predicts RNA-seq, ATAC-seq, ChIP-seq, and histone

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Cellpose — generalist deep learning algorithm for cellular and nuclear segmentation in microscopy images. Provides GPU-accelerated 2D and 3D instance segmentation using gradient flow representations,

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QuPath — open-source platform for whole slide image analysis and digital pathology. Provides interactive tools for tissue detection via thresholding, cell detection and positive cell classification (H

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ZeroCostDL4Mic is a Google Colab-based platform providing zero-cost deep learning for fluorescence microscopy image analysis. Supports segmentation (U-Net, StarDist, Cellpose), denoising (Noise2Void,

1 shared topic • 1 shared operation