scispaCy

LitVar — biomedical literature mining for genetic variants. Search PubMed and PMC full-text articles for mentions of SNPs, indels, and other genetic variants by rsID, gene name, or HGVS notation. Retr

3 shared topics • 1 shared operation

Use when working with Sapiens — a BERT-based human antibody language model for antibody humanization, humanness scoring, and sequence design. Sapiens predicts humanizing mutations, scores residue-leve

3 shared topics • 1 shared operation

DeepCell — deep learning library for single-cell analysis of biological images using TensorFlow. Provides pretrained models for cell segmentation including Mesmer (multiplexed tissue imaging), nuclear

2 shared topics • 1 shared operation

Docker — container platform for building, running, and distributing reproducible bioinformatics environments. Provides Dockerfile authoring, image management, container execution with volume mounts fo

2 shared topics • 1 shared operation

DRAGEN (Dynamic Read Analysis for GENomics) — Illumina's FPGA-accelerated bioinformatics platform for secondary analysis of next-generation sequencing data. Performs hardware-accelerated mapping, alig

2 shared topics • 1 shared operation