SimBiology

mrgsolve — R package for simulation from ODE-based PK/PD and systems pharmacology models with C++ model code, NONMEM-style event/data inputs, and high-throughput population simulation workflows. Use w

3 shared topics • 1 shared operation

BioRender — web-based platform for creating professional scientific figures, illustrations, and diagrams. Use for designing publication-quality figures for research papers, grants, posters, and presen

2 shared topics • 1 shared operation

Use when correcting copy-number bias in CRISPR-Cas9 essentiality screens with CERES. Handles guide-level depletion data from Project Achilles or custom CRISPR knockout screens, integrating segmented c

2 shared topics • 1 shared operation

CHOPCHOP — web-based and command-line tool for designing optimized CRISPR guide RNAs (sgRNA) and TALENs. Supports Cas9, Cas9 nickase, Cpf1/Cas12a, and Cas13 nuclease systems across 200+ genomes. Provi

2 shared topics • 1 shared operation

MAGeCK-VISPR — comprehensive CRISPR screen analysis framework combining MAGeCK statistical testing (RRA and MLE algorithms) with VISPR interactive visualization. Supports sgRNA count generation from F

2 shared topics • 1 shared operation