SEACR (Sparse Enrichment Analysis for CUT&RUN)

GSEA — Gene Set Enrichment Analysis determines whether a priori defined gene sets show statistically significant, concordant differences between two biological states. Computes enrichment scores via a

1 shared topic • 1 shared operation

MAGeCK (Model-based Analysis of Genome-wide CRISPR-Knockout) -- computational pipeline for CRISPR genetic screen analysis. Performs sgRNA counting from FASTQ files (mageck count), gene-level essential

1 shared topic • 1 shared operation

MEME Suite — comprehensive motif analysis toolkit for DNA, RNA, and protein sequences. Provides de novo motif discovery (MEME, STREME), motif scanning (FIMO), motif comparison (TOMTOM), motif enrichme

1 shared topic • 1 shared operation

PinAPL-Py (Pooled In/out Screen Analysis Pipeline for Python) is a complete analysis pipeline for pooled CRISPR sgRNA screens. Handles raw FASTQ alignment to sgRNA libraries, read counting, normalizat

1 shared topic • 1 shared operation

STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat

1 shared topic • 1 shared operation