MEME Suite

MEME Suite — motif-based sequence analysis toolkit for de novo motif discovery (MEME, STREME), motif enrichment testing (AME, SEA, CentriMo), motif scanning (FIMO, MAST, MCAST), motif comparison (Tomt

2 shared topics • 1 shared operation

STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat

2 shared topics • 1 shared operation

BEDTools — Swiss-army knife for genome arithmetic on genomic intervals. Provides intersect, merge, subtract, complement, closest, window, coverage, genomecov, slop, flank, sort, groupby, getfasta, mas

2 shared topics

Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem

2 shared topics

OrthoFinder — fast, accurate ortholog inference for comparative genomics. Identifies orthogroups, orthologs, gene trees, rooted species trees, and gene duplication events from protein or nucleotide se

2 shared topics