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SBML tools skill for Systems Biology Markup Language model validation, inspection, conversion, and reproducible preprocessing using libSBML. Use this when users ask about SBML Level/Version compatibil
Use with AI
Install the MCP server or CLI to instantly fetch SBML Tools documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/sbml-tools
BioGRID — curated repository of protein-protein interactions, genetic interactions, chemical interactions, and post-translational modifications from the published literature. Provides REST API (v4+) f
1 shared topic
Use when working with NetworkX, graph analysis in Python, biological network analysis, protein-protein interaction networks, gene regulatory networks, metabolic networks, pathway analysis, network top
1 shared topic
pathfindR is an R package for active-subnetwork-oriented pathway enrichment analysis. It maps a gene list (typically a differential expression result with fold-changes and p-values) onto a protein-pro
1 shared topic
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
1 shared topic
WGCNA (Weighted Gene Co-expression Network Analysis) — R package for constructing weighted correlation networks from high-dimensional gene expression data. Identifies co-expression modules via hierarc
1 shared topic