Pathfindr

Use when working with ReactomePA — an R/Bioconductor package for Reactome Pathway Analysis. Performs over-representation analysis (ORA) and gene set enrichment analysis (GSEA) against the Reactome pat

2 shared topics • 1 shared operation

Cellpose — generalist deep learning algorithm for cellular and nuclear segmentation in microscopy images. Provides GPU-accelerated 2D and 3D instance segmentation using gradient flow representations,

2 shared topics

Use when inferring mechanistic causal links across multiple omics layers with COSMOS (Causal Oriented Search of Multi-Omics Space). Integrates metabolomics, transcriptomics, and signaling pathway data

2 shared topics

Use when working with NetworkX, graph analysis in Python, biological network analysis, protein-protein interaction networks, gene regulatory networks, metabolic networks, pathway analysis, network top

2 shared topics

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

2 shared topics