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Use when working with ribosome profiling (Ribo-seq) data and ORF discovery using Ribo-TISH — a Python toolkit for genome-wide identification and differential analysis of translational initiation. Cove
Use with AI
Install the MCP server or CLI to instantly fetch Ribo-TISH documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/riboseq-tools
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gff3sort is a fast command-line tool for sorting GFF3 annotation files so that parent features always appear before their child features, and features on the same sequence are ordered by start coordin
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Juicebox — interactive visualization and analysis tool for Hi-C and other proximity-ligation chromatin conformation data. Loads .hic files produced by Juicer, Dovetail, or Arima workflows and enables
1 shared topic • 2 shared operations
MetaWRAP — flexible pipeline for genome-resolved metagenomic data analysis. Wraps read QC (trimming, host removal), metagenomic assembly (MEGAHIT, metaSPAdes), binning (MaxBin2, metaBAT2, CONCOCT), bi
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Signac — R toolkit for single-cell chromatin accessibility analysis built on Seurat. Processes scATAC-seq data from 10x Genomics and other platforms. Handles fragment files, performs TF-IDF normalizat
1 shared topic • 2 shared operations