gff3sort

AGAT (Another Gff Analysis Toolkit) — comprehensive Perl toolkit for reading, writing, validating, fixing, and manipulating genome annotation files in GFF3, GTF, and GFF2 formats. Converts between for

1 shared topic • 2 shared operations

Juicebox — interactive visualization and analysis tool for Hi-C and other proximity-ligation chromatin conformation data. Loads .hic files produced by Juicer, Dovetail, or Arima workflows and enables

1 shared topic • 2 shared operations

MetaWRAP — flexible pipeline for genome-resolved metagenomic data analysis. Wraps read QC (trimming, host removal), metagenomic assembly (MEGAHIT, metaSPAdes), binning (MaxBin2, metaBAT2, CONCOCT), bi

1 shared topic • 2 shared operations

nf-core/mag — Nextflow pipeline for metagenome-assembled genome (MAG) analysis. Takes raw short-read (Illumina) and/or long-read (Nanopore/PacBio) metagenomic sequencing data through quality control,

1 shared topic • 2 shared operations

Signac — R toolkit for single-cell chromatin accessibility analysis built on Seurat. Processes scATAC-seq data from 10x Genomics and other platforms. Handles fragment files, performs TF-IDF normalizat

1 shared topic • 2 shared operations