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QIIME2 food-science plugin routing skill for amplicon-based microbiome analysis in food, fermentation, and agricultural contexts. Use this skill when users mention QIIME2, qiime2, q2-food-science, foo
Use with AI
Install the MCP server or CLI to instantly fetch QIIME2 Food Plugins documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/qiime2-food-plugins
Anvi'o — integrated analysis and visualization platform for 'omics data. Supports metagenomics (MAG binning, refinement, read recruitment), pangenomics (gene cluster analysis, ANI computation), phylog
1 shared topic • 1 shared operation
CNVkit -- Python toolkit for detecting copy number variants (CNVs) from targeted DNA sequencing data (hybrid capture, amplicon) and whole-genome sequencing (WGS). Leverages both on-target and off-targ
1 shared topic • 1 shared operation
CRISPR-DAV (CRISPR DNA Analysis and Visualization) is a pipeline for analyzing and visualizing CRISPR editing outcomes from amplicon sequencing (NGS) data. Detects indels, substitutions, HDR events, a
1 shared topic • 1 shared operation
Krona — interactive HTML pie chart visualization of hierarchical taxonomic data from metagenomics and sequence classification. Part of KronaTools, which provides importers for Kraken2, BLAST, Diamond,
1 shared topic • 1 shared operation
MaAsLin 2 (Microbiome Multivariable Association with Linear Models 2) is the bioBakery tool for finding associations between microbial features (taxa, functional pathways, gene families) and sample me
1 shared topic • 1 shared operation