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CRISPR-DAV (CRISPR DNA Analysis and Visualization) is a pipeline for analyzing and visualizing CRISPR editing outcomes from amplicon sequencing (NGS) data. Detects indels, substitutions, HDR events, a
Use with AI
Install the MCP server or CLI to instantly fetch CRISPR-DAV documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/crispr-dav
CNVkit -- Python toolkit for detecting copy number variants (CNVs) from targeted DNA sequencing data (hybrid capture, amplicon) and whole-genome sequencing (WGS). Leverages both on-target and off-targ
2 shared topics • 1 shared operation
CRISPResso2 — Python tool for quantifying CRISPR genome editing outcomes from amplicon sequencing data. Analyzes NHEJ (insertions, deletions), HDR, and mixed repair outcomes. Supports single amplicon
2 shared topics • 1 shared operation
Import, plot, and analyze bathymetric and topographic data in R. The `marmap` package provides helpers to query ETOPO bathymetry from NOAA, manipulate `bathy` grid objects, draw 2D and 3D seafloor map
2 shared topics • 1 shared operation
Mothur is an open-source bioinformatics platform for microbial ecology analysis. Provides tools for 16S/18S/ITS amplicon sequence processing, OTU clustering, phylotype classification, ASV generation,
2 shared topics • 1 shared operation
Pavian — interactive R/Shiny web application for metagenomics analysis and visualization. Reads classification reports from Kraken, Kraken2, Bracken, MetaPhlAn, DIAMOND+MEGAN, and Centrifuge to genera
2 shared topics • 1 shared operation