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Use when working with ProtTrans — a collection of protein language models (ProtT5, ProtBert, ProtAlbert, ProtXLNet, ProtElectra) — for generating protein sequence embeddings, secondary structure predi
Use with AI
Install the MCP server or CLI to instantly fetch ProtTrans documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/protrans
ProteinBERT — universal deep-learning model for protein sequences and function. Generate per-residue and global protein embeddings using a BERT-style transformer pretrained on 106 million UniRef90 seq
1 shared topic • 2 shared operations
Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.
1 shared topic • 1 shared operation
Boltz-1 — open-source deep learning model for predicting biomolecular 3D structures and interactions, approaching AlphaFold3-level accuracy. Supports protein, DNA, RNA, and small-molecule ligand struc
1 shared topic • 1 shared operation
Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem
1 shared topic • 1 shared operation
Direct REST API access to UniProt (250M+ protein sequences, 570K+ reviewed Swiss-Prot entries). Protein search, FASTA/JSON retrieval, ID mapping across 200+ databases, batch retrieval, streaming, fiel
1 shared topic • 1 shared operation