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PanglaoDB — curated single-cell RNA sequencing database providing cell type marker genes, scRNA-seq datasets, and programmatic access tools for cell type annotation. Covers 1,000+ cell types across hu
Use with AI
Install the MCP server or CLI to instantly fetch PanglaoDB documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/panglaodb
CellTypist — automated cell type annotation for scRNA-seq using logistic regression with pre-trained immune models, majority voting refinement, multi-label classification, custom model training, cross
2 shared topics • 1 shared operation
Use when working with Sapiens — a BERT-based human antibody language model for antibody humanization, humanness scoring, and sequence design. Sapiens predicts humanizing mutations, scores residue-leve
2 shared topics • 1 shared operation
CytoTRACE -- computational method for predicting relative differentiation state of cells from single-cell RNA-seq data. Uses gene counts (number of detectably expressed genes per cell) as a robust pro
2 shared topics
DecontX — R/Bioconductor method in the celda package for estimating and removing ambient RNA contamination from droplet-based single-cell RNA-seq data. Uses a Bayesian Dirichlet mixture model over cel
2 shared topics
Tools for manipulating next-generation sequencing data stored in SAM/BAM/CRAM format, including sorting, indexing, and format conversion.
2 shared topics