CellTypist

PanglaoDB — curated single-cell RNA sequencing database providing cell type marker genes, scRNA-seq datasets, and programmatic access tools for cell type annotation. Covers 1,000+ cell types across hu

2 shared topics • 1 shared operation

Use when working with Sapiens — a BERT-based human antibody language model for antibody humanization, humanness scoring, and sequence design. Sapiens predicts humanizing mutations, scores residue-leve

2 shared topics • 1 shared operation

Use this skill for SCTransform normalization of single-cell RNA-seq count matrices. Route here when users ask about variance stabilizing transformation (VST), regularized negative binomial regression

2 shared topics • 1 shared operation

BERN2 (Biomedical Entity Recognition and Normalization 2) is a biomedical NLP tool for named entity recognition and normalization in free text and PubMed abstracts. Identifies and normalizes genes, di

1 shared topic • 2 shared operations

dbSNP tools — NCBI toolkit for querying, downloading, and processing dbSNP variant data. Look up rsIDs via REST API, bulk-download VCF/JSON releases, annotate variant lists with allele frequencies and

1 shared topic • 2 shared operations