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Use when working with nf-core/nanoseq — a reproducible Nextflow pipeline for Oxford Nanopore Technology (ONT) long-read sequencing data. Covers basecalling (Guppy/Dorado), alignment (minimap2), QC (Na
Use with AI
Install the MCP server or CLI to instantly fetch nf-core/nanoseq documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/nf-corenanoseq
buttery-eel — streaming Guppy/Dorado basecaller wrapper for Oxford Nanopore SLOW5/BLOW5 format long-read sequencing data. Streams reads from SLOW5 or BLOW5 files directly through a running Guppy serve
2 shared topics • 2 shared operations
DRAGEN (Dynamic Read Analysis for GENomics) — Illumina's FPGA-accelerated bioinformatics platform for secondary analysis of next-generation sequencing data. Performs hardware-accelerated mapping, alig
2 shared topics • 2 shared operations
FLAIR — Full-Length Alternative Isoform analysis of RNA for long-read sequencing. Corrects, defines, and quantifies transcript isoforms from nanopore cDNA, native RNA, and PacBio reads. Provides splic
2 shared topics • 2 shared operations
Novocraft suite — short-read alignment and BAM sorting for DNA-seq and RNA-seq. novoalign maps Illumina, Ion Torrent, and 454 reads to indexed reference genomes with Smith-Waterman scoring for high-ac
2 shared topics • 2 shared operations
Remora is an Oxford Nanopore Technologies (ONT) tool for modified base calling from nanopore sequencing data. Trains neural network models to detect base modifications (5mC, 5hmC, m6A, pseudouridine,
2 shared topics • 2 shared operations