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buttery-eel — streaming Guppy/Dorado basecaller wrapper for Oxford Nanopore SLOW5/BLOW5 format long-read sequencing data. Streams reads from SLOW5 or BLOW5 files directly through a running Guppy serve
Use with AI
Install the MCP server or CLI to instantly fetch buttery-eel documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/buttery-eel
Use when working with nf-core/nanoseq — a reproducible Nextflow pipeline for Oxford Nanopore Technology (ONT) long-read sequencing data. Covers basecalling (Guppy/Dorado), alignment (minimap2), QC (Na
2 shared topics • 2 shared operations
Remora is an Oxford Nanopore Technologies (ONT) tool for modified base calling from nanopore sequencing data. Trains neural network models to detect base modifications (5mC, 5hmC, m6A, pseudouridine,
2 shared topics • 2 shared operations
blue-crab converts Oxford Nanopore Technology (ONT) sequencing data between POD5 and SLOW5/BLOW5 file formats. Use for long-read genomics workflows that require SLOW5/BLOW5 input (e.g., Buttery-eel ba
1 shared topic • 3 shared operations
HTSlib — C library and command-line utilities for reading, writing, indexing, and manipulating high-throughput sequencing data in SAM, BAM, CRAM, VCF, BCF, and tabix-indexed formats. Provides bgzip bl
1 shared topic • 3 shared operations
slow5tools -- command-line toolkit for converting, compressing, merging, splitting, indexing, and extracting reads from SLOW5/BLOW5 format files. SLOW5/BLOW5 is an alternative to HDF5-based FAST5/POD5
1 shared topic • 3 shared operations