needletail — high-performance Rust-based FASTA/FASTQ parser with Python bindings. Parse FASTA and FASTQ files at near-C speed using parse_fastx_file and parse_fastx_string. Provides k-mer extraction w
Use with AI
Install the MCP server or CLI to instantly fetch needletail documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/needletail
GeneAbacus — fast Go-based tool for counting and profiling sequencing reads within genes, chromosomes, or constructs from SAM/BAM files. Supports mRNA-seq, Ribo-seq, ChIP-seq, CLIP-seq, Structure-seq,
1 shared topic • 1 shared operation
LipidSig routing skill for lipidomics data analysis. Use this skill when users mention LipidSig, lipid species profiling, lipid class enrichment, differential lipid analysis, lipidomics volcano plots,
1 shared topic • 1 shared operation
metaX routing skill for metabolomics and lipidomics data analysis. Use this skill when users mention metaX, metaXpipe, QC-RLSC normalization, metabolomics peak intensity normalization, LC-MS data prep
1 shared topic • 1 shared operation
styler formats R source code according to the tidyverse style guide or custom style guides. Use this skill when users need deterministic formatting for .R/.Rmd/.qmd files, repo-wide style normalizatio
1 shared topic • 1 shared operation
Programmatic access to the U.S. EPA ToxCast and Tox21 high-throughput screening (HTS) bioactivity data via the CTX APIs. Use to query chemical hazard profiles, AC50 values, and hit-calls across thousa
1 shared topic