msigdbr

Reactome graph database — EMBL-EBI curated biological pathway knowledgebase with Neo4j graph backend and REST API. Supports pathway enrichment analysis, over-representation testing, graph topology tra

1 shared topic • 3 shared operations

clusterProfiler — universal enrichment analysis tool for interpreting omics data using Gene Ontology, KEGG pathways, WikiPathways, Reactome, Disease Ontology, and custom gene sets. Implements over-rep

1 shared topic • 2 shared operations

FUMA (Functional Mapping and Annotation of Genome-Wide Association Studies) maps GWAS summary statistics to genes and biological functions via three complementary strategies: positional mapping, eQTL

1 shared topic • 2 shared operations

MetaboAnalyst — comprehensive R package and web platform for metabolomics data analysis and interpretation. Provides statistical analysis (t-test, ANOVA, PCA, PLS-DA), pathway analysis (KEGG, SMPDB),

1 shared topic • 2 shared operations

STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat

1 shared topic • 2 shared operations