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Use when working with Merqury.fk (MerquryFK) for reference-free genome assembly quality evaluation using k-mer spectra analysis. MerquryFK computes quality value (QV) scores and assembly completeness
Use with AI
Install the MCP server or CLI to instantly fetch Merqury.fk documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/merquryfk
Stacks is a software pipeline for building loci from short-read sequencing data (RAD-seq, GBS, ddRAD, 2b-RAD) for population genomics and phylogeography. Supports de novo and reference-guided assembly
3 shared topics • 1 shared operation
Use when working with bigsnpr — an R package for analysis of massive
3 shared topics
NgsRelate — pairwise relatedness estimation from NGS data using genotype likelihoods. Estimates kinship coefficients, R0/R1/KING-robust statistics, and inbreeding coefficients from VCF/BCF files or AN
3 shared topics
ScreenProcessing — Python pipeline for analyzing pooled genetic screens (CRISPRi/CRISPRa). Converts raw FASTQ sequencing files into library counts using fastqgz_to_counts.py, then generates sgRNA phen
3 shared topics
vt — C++ command-line variant tool set for manipulating VCF files. Provides variant normalization (left-alignment and trimming), multiallelic decomposition, VCF summary statistics (peek), annotation,
3 shared topics