NgsRelate

Forensic genetics — probabilistic genotyping, STR mixture interpretation, kinship and paternity analysis, population allele frequency databases, and NGS-based forensic sequencing. Covers R packages: f

3 shared topics • 1 shared operation

Use when performing Mendelian randomization (MR) analyses to estimate causal effects of exposures on outcomes using genetic variants as instrumental variables. Covers two-sample MR, IVW, MR-Egger, wei

3 shared topics • 1 shared operation

ScreenProcessing — Python pipeline for analyzing pooled genetic screens (CRISPRi/CRISPRa). Converts raw FASTQ sequencing files into library counts using fastqgz_to_counts.py, then generates sgRNA phen

3 shared topics • 1 shared operation

Use when working with bigsnpr — an R package for analysis of massive

3 shared topics

vt — C++ command-line variant tool set for manipulating VCF files. Provides variant normalization (left-alignment and trimming), multiallelic decomposition, VCF summary statistics (peek), annotation,

3 shared topics