iClusterPlus

DKFZ OTP (One Touch Pipeline) — the German Cancer Research Center ODCF bioinformatics platform for large-scale genomic sequencing data management and analysis. Provides Roddy-based workflows for align

2 shared topics • 2 shared operations

SUPPA2 — fast, accurate analysis of alternative splicing from RNA-seq data. Calculates PSI (Percent Spliced In) values per event and per transcript from transcript quantification (Salmon, kallisto, RS

1 shared topic • 3 shared operations

Use when working with nf-core/nanoseq — a reproducible Nextflow pipeline for Oxford Nanopore Technology (ONT) long-read sequencing data. Covers basecalling (Guppy/Dorado), alignment (minimap2), QC (Na

2 shared topics • 1 shared operation

Novocraft suite — short-read alignment and BAM sorting for DNA-seq and RNA-seq. novoalign maps Illumina, Ion Torrent, and 454 reads to indexed reference genomes with Smith-Waterman scoring for high-ac

2 shared topics • 1 shared operation

SEACells — single-cell metacell identification using kernel archetypal analysis. Aggregates highly similar single cells into metacells that preserve transcriptional and epigenomic heterogeneity while

2 shared topics • 1 shared operation