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2 shared topics • 1 shared operation

BRAKER — fully automated gene structure annotation pipeline combining GeneMark-ES/ET/EP/ETP with AUGUSTUS training. Supports RNA-Seq evidence (BRAKER1), protein evidence (BRAKER2), and combined RNA-Se

2 shared topics • 1 shared operation

GeMoMa (Gene Model Mapper) is a Java-based homology-driven gene prediction tool for eukaryotic genome annotation. Uses protein and CDS sequences from annotated reference species to predict gene models

2 shared topics • 1 shared operation

gffread -- GFF/GTF utility for filtering, converting, and extracting sequences from genome annotation files. Converts between GFF3 and GTF formats, extracts transcript (FASTA) and protein sequences fr

2 shared topics • 1 shared operation

MAKER — portable genome annotation pipeline that integrates ab initio gene predictors (SNAP, Augustus, GeneMark), protein and EST evidence alignment, and repeat masking to produce GFF3 gene models wit

2 shared topics • 1 shared operation